[Essays] `graft`

신록예찬
2023-11-09

Imports

소스코드 다운로드: https://github.com/guebin/graft

계속 업데이트할 예정

!git clone https://github.com/guebin/graft

fatal: destination path 'graft' already exists and is not an empty directory.

!conda install -c conda-forge graph-tool -y

Collecting package metadata (current_repodata.json): done
Solving environment: done


==> WARNING: A newer version of conda exists. <==
  current version: 22.9.0
  latest version: 23.10.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Retrieving notices: ...working... done

import numpy as np
import torch
import torch_geometric
import warnings
warnings.filterwarnings("ignore")

import graft

ImportError: /home/coco/anaconda3/envs/gt/lib/python3.11/site-packages/torch/lib/libgomp-a34b3233.so.1: version `GOMP_5.0' not found (required by /home/coco/anaconda3/envs/gt/lib/python3.11/site-packages/graph_tool/libgraph_tool_core.so)

links = torch.tensor([[0, 1, 2, 3, 4, 3],
                      [1, 0, 3, 2, 3, 4]], dtype=torch.long)
g = torch_geometric.data.Data(
    edge_index = links
)

graft.graph.plot_undirected_unweighted(g)

NameError: name 'graft' is not defined

# Ex – node_names

graft.graph.plot_undirected_unweighted(
    g, 
    node_names = ['a','b','c','d','e'], 
)

# Ex – node_color (continuous)

links = torch.tensor([[0, 1, 2, 3, 4, 3],
                      [1, 0, 3, 2, 3, 4]], dtype=torch.long)
g = torch_geometric.data.Data(
    edge_index = links, 
    y = np.random.randn(5)
)

graft.graph.plot_undirected_unweighted(
    g,
    node_color=g.y
)

# Ex – node_color (discrete)

links = torch.tensor([[0, 1, 2, 3, 4, 3],
                      [1, 0, 3, 2, 3, 4]], dtype=torch.long)
g = torch_geometric.data.Data(
    edge_index = links, 
    y = torch.tensor([0,1,0,0,1])
)

graft.graph.plot_undirected_unweighted(
    g,
    node_color=g.y
)

# Ex – node_color (discrete) / node_size

links = torch.tensor([[0, 1, 2, 3, 4, 3],
                      [1, 0, 3, 2, 3, 4]], dtype=torch.long)
g = torch_geometric.data.Data(
    edge_index = links, 
    y = torch.tensor([0,1,0,0,1]),
    x = torch.tensor([10,100,15,20,150])
)

graft.graph.plot_undirected_unweighted(
    g,
    node_color=g.y,
    node_size=g.x
)

# Ex – draw options

links = torch.tensor([[0, 1, 2, 3, 4, 3],
                      [1, 0, 3, 2, 3, 4]], dtype=torch.long)
g = torch_geometric.data.Data(
    edge_index = links
)

graft.graph.plot_undirected_unweighted(
    g,
)

dr_opts = {
    'vertex_size':30
}
graft.graph.plot_undirected_unweighted(
    g,
    draw_options= dr_opts
)

dr_opts = {
    'edge_marker_size': 200, 
    'output_size': (300,300)
}
graft.graph.plot_undirected_unweighted(
    g,
    draw_options= dr_opts
)

Undirected / Weighted

# Ex

links = torch.tensor([[0, 1, 2, 3, 4, 3],
                      [1, 0, 3, 2, 3, 4]], dtype=torch.long)
weights = torch.tensor([5, 5, 1.5, 1.5, 0.19, 0.19], dtype=torch.float)

g = torch_geometric.data.Data(
    edge_index=links,
    edge_attr=weights,
)

graft.graph.plot_undirected_weighted(
    g,
)

# Ex

links = torch.tensor([[0, 1, 2, 3, 4, 3],
                      [1, 0, 3, 2, 3, 4]], dtype=torch.long)
weights = torch.tensor([5, 5, 1.5, 1.5, 0.19, 0.19], dtype=torch.float)

g = torch_geometric.data.Data(
    edge_index=links,
    edge_attr=weights,
)

graft.graph.plot_undirected_weighted(
    g,
    edge_weight_text=False
)

graft.graph.plot_undirected_weighted(
    g,
    edge_weight_text=False,
    edge_weight_width=False
)

graft.graph.plot_undirected_weighted(
    g,
    edge_weight_text=True,
    edge_weight_width=True,
    edge_weight_text_format='.1f',
)

graft.graph.plot_undirected_weighted(
    g,
    edge_weight_text=True,
    edge_weight_width=True,
    edge_weight_text_format='.1f',
    edge_weight_width_scale=5.0,
)

# Ex

links = torch.tensor([[0, 1, 2, 3, 4, 3],
                      [1, 0, 3, 2, 3, 4]], dtype=torch.long)
weights = torch.tensor([5, 5, 1.5, 1.5, 0.19, 0.19], dtype=torch.float)

g = torch_geometric.data.Data(
    edge_index=links,
    edge_attr=weights,
    y = torch.tensor([1,1,0,0,0])
)

graft.graph.plot_undirected_weighted(
    g,
    node_color=g.y
)

# Ex

links = torch.tensor([[0, 1, 2, 3, 4, 3],
                      [1, 0, 3, 2, 3, 4]], dtype=torch.long)
weights = torch.tensor([5, 5, 1.5, 1.5, 0.19, 0.19], dtype=torch.float)
g = torch_geometric.data.Data(
    edge_index = links, 
    edge_attr = weights,
    y = torch.tensor([0,1,0,0,1]),
    x = torch.tensor([1,3,1,2,4])
)

graft.graph.plot_undirected_weighted(
    g,
    node_color=g.y,
    node_size=g.x,
    edge_weight_text=False,
)

[Essays] graft

Imports

Undirected / Weighted

[Essays] `graft`